Data collection: zoonoses, antimicrobial resistance and food-borne
Deadlines for 2023 data reporting and validation
The milestones of 2023 data reporting as agreed during the Zoonoses Network meeting:
1 March 2024
The opening of the reporting period
31 May 2024
Closure of the reporting period
EU Summary tables will be displayed in MicroStrategy reports; any change in data during the data reporting and correction periods will be displayed automatically in the EU summary reports in MicroStrategy the day following a dataset submission.
1 – 12 June 2024
First validation period
12 June 2024
Letters requesting scientific clarifications and/or amendments (if needed) sent to the MSs
12 – 27 June 2024
First data correction by MSs
28 June – 9 July 2024
Final validation period
9 – 17 July 2024
Final data correction by MSs
By 19 July 2024
Acceptance of data in the Scientific Datawarehouse (DWH)
21 July 2024
EFSA validates the final submitted and corrected data (against several criteria)
EFSA validates the final submitted and corrected data (against several criteria). After 21 July 2024, data cannot be changed, as data extracted on this date will be used to draft the 2023 EUOHZ. Erroneous data (e.g. combination of matrix/pathogen) will not be included in the analysis.
1 – 30 November 2024
Amendments to 2023 data and of historical data can be carried out
These data will be used in the National reports and in the scientific data warehouse (DWH) but will not be included in the analysis of EUOHZ 2023.
Guidelines for reporting data on zoonoses, antimicrobial resistance and food-borne
- Manual for reporting on zoonoses and zoonotic agents, within the framework of Directive 2003/99/EC, and on some other pathogenic microbiological agents for information derived from the year 2023
- Manual for reporting 2023 antimicrobial resistance data within the framework of Directive 2003/99/EC and Decision 2020/1729
- Zoonoses, foodborne outbreaks and antimicrobial resistance guidance for reporting 2023 data
The catalogues extracted in the Excel format
Links to the annual reports
- The European Union One Health Zoonoses Report: 2011 | 2012 | 2013 | 2014 | 2015 | 2016 | 2017 | 2018 | 2019 | 2020 | 2021 | 2022
- EU summary report on AMR in zoonotic and indicator bacteria from humans, animals and food: 2011 | 2012 | 2013 | 2014 | 2015 | 2016 | 2017 | 2018 | 2019 | 2021 | 2022
- National zoonoses country reports
Dashboards and story maps
Foodborne outbreaks
Prevalence
- Salmonella dashboard
- Salmonella story map
- Listeria dashboard
- Listeria monocytogenes story map
- Campylobacter dashboard
- Campylobacter story map
Antimicrobial resistance
Whole genome sequencing
- Guidelines for reporting Whole Genome Sequencing-based typing data through the EFSA One Health WGS System
- Collaboration Agreement on the management and sharing of molecular typing data of isolates from human, food, feed, animal, and the related environment for public health purposes
- EFSA One Health WGS System
- EFSA One Health WGS System Learning Environment